ABOUT ME
A self-motivated and passionate thesis student pursuing a Master's in Molecular Biology and Bioinformatics, with a
keen interest in drug discovery in oncology. Ranked in the top four of my BSc cohort and achieved the highest mark
in my 1st-year score. Experienced in molecular biology and bioinformatics research, with conference presentations
and published research papers, driven by a strong ambition for scientific discovery.
WORK EXPERIENCE
Thesis Student
Functional Genomics and Proteomics Laboratory (FGPL) [ 01/01/2024 – Current ]
City: Chittagong | Country: Bangladesh
• One of the best Molecular Biology Lab in the department of Genetic Engineering and Biotechnology, University
of Chittagong, and I am one of the 4 students among 35 selected in this lab.
• Researching into the specifics of Diabetes, CVD, CKD, PCOS, and Periodontitis variant analysis in Bangladeshi
population.
• Sanger sequencer for sequencing a particular region of DNA.
• rtPCR for detecting the DNA content and Conventional PCR for amplication of DNA.
• DNA extraction, DNA Quantification, DNA visualization using Phenol-Chloroform, Nanodrop and UV
spectrometry.
Summer Intern
Alternative Medicine and Natural Product Research Lab, [ 01/07/2023 – 01/10/2023 ]
City: Chittagong | Country: Bangladesh
• One of the 40 summer interns slected to work on the largest phytochemical and nanoparticle extraction lab in
the university of Chittagong arranged by the Chittagong University Research and Higher Studies Society
(CURHS).
• Procedure of nanophytocompounds isolation from plant extract.
• Introduction phytocompounds into animal model (Mice and Rat) for assessing their medicinal, antioxidant, and
antimicrobial properties.
• Bioinformatics analysis of phytocompounds for screening better compounds using docking, Molecular dynamics
simulation.
Intern
National Institute of Biotechnology (NIB), [ 01/11/2023 – 02/12/2023 ]
City: Dhaka | Country: Bangladesh
• As a part of course work, assigned by dept. of genetic engineering and Biotechnology to work on this
government-owned pioneer research institute of Bangladesh.
• Spent a month in a molecular biology lab working with sanger and NGS.
• Besides, DNA extraction, amplication and visualization were practiced on hands.
Md. Hridoy Ahmed
Nationality: Bangladeshi Date of birth: 12/01/1999
 Phone number: (+880) 01622488559  Email address: hridoy.geb@std.cu.ac.bd
 LinkedIn: https://www.linkedin.com/in/hridoy-ahmed-0438521b4/
 Website: https://hridoysite.webnode.page
 Home: Terohasia, Bawlai, Kishoreganj, 4331 Kishoreganj (Bangladesh)
 Work: Hathazari Rd Chittagong, 4331 Chittagong (Bangladesh)
Research coord, Instructor
BioPC - A Bioinformatics Lab of Research and Training, [ 10/10/2022 – Current ]
City: Chittagong | Country: Bangladesh
• Founder of one of the largest bioinformatics communities in Bangladesh.
• Instructed in 15 training program as a chief trainer over 1000 students
• Arranged 2 nationwide bioinformatics Olympiads (virtual) and about 5 workshops related to bioinformatics.
• Conducted 6 research projects with 40 trainees.
• Published 2 research articles in Q1 Journal.
Biology Teacher
Unique Coaching Center, [ 01/10/2020 – 31/12/2022 ]
City: Chittagong | Country: Bangladesh
EDUCATION AND TRAINING
BSc. in Genetic Engineering & Biotechnology.
University of Chittagong [ 01/01/2019 – 30/12/2023 ]
City: Chittagong | Country: Bangladesh | Website: https://web.cu.ac.bd/v2/ | Field(s) of study: Genetic
Engineering & Biotechnology. | Final grade: First Class Hons with a 97% average | Level in EQF: EQF level 6 |
Number of credits: 160
Relevant Modules:
Introduction of Genetic Engineering & Biotechnology, Cell Biology, Genetics & Cytogenetics, Biochemistry,
Microbiology, Molecular Biology, Gene & Genomics, Metabolism & Bioenergetics, Enzymology, Endocrinology &
Neurobiology, Developmental Biology, Molecular Genetics, Microbial Genetics, Clinical Biotechnology, Immunology,
Cell Signaling, Recombinant DNA Technology, and Research Methodology and Bioinformatics.
Practical knowledge:
• Sanger sequencer for sequencing a particular region of DNA.
• rtPCR for detecting the DNA content and Conventional PCR for amplication of DNA.
• DNA extraction, DNA Quantification, DNA visualization using Phenol-Chloroform, Nanodrop and UV
spectrometry.
Higher Secondary Certificate
Gurudoyal Govt. College [ 01/01/2016 – 28/02/2018 ]
City: Kishoreganj | Country: Bangladesh | Website: https://www.gdc.gov.bd/ | Field(s) of study: Science | Final
grade: GPA: 5 | Level in EQF: EQF level 4
• Physics
• Chemistry
• Botany
• Zoloogy
• Higher Mathematics
• Information and Communication technology
• English
Secondary School Certificate
Syed Habibul Haq High School [ 2010 – 2015 ]
City: Kishoreganj | Country: Bangladesh | Level in EQF: EQF level 3
LANGUAGE SKILLS
Mother tongue(s): Bengali
Other language(s):
English
LISTENING C1 READING C2 WRITING C1
SPOKEN PRODUCTION C1 SPOKEN INTERACTION B2
Levels: A1 and A2: Basic user; B1 and B2: Independent user; C1 and C2: Proficient user
DIGITAL SKILLS
Microsoft Office
Miceosoft Powerpoint / Microsoft Excel / Microsoft Word / Google Form / Social Media
Programming Knowledge
HTML / CSS / R programming language / Python / LaTex
Operating System
Unix / Linux / MacOS / Windows / VMD
Bioinformatics Tools
Autodock Vina / Gromacs / Schrodinger / MEGA / NAMD / Gauss View / Desmond / GEO / DFT / MarvinJS / Cytoscape /
SwissADME/MODEL / Graphpad / ChimeraX / ArrayExpress / IPA / Discovery studio / PyRx / OrginPro / STRING / Lignd
Scout / Pymol
PROJECTS
[ Current ]
MS thesis, Title: “From Bacterial Invasion to Periapical Lesions: The Epidemiology and Molecular Mechanisms
Underlying Apical Periodontitis in Bangladeshi Populations with a Focus on MMP-3 gene.” Learning outcomes:
DNA extraction, PCR, Gel electrophoresis, DNA quantification, Sanger sequencing, Variation analysis.
[ 2022 – 2023 ]
UnderGrad project, Title: “A Structure-Oriented Drug Design Strategy for the Discovery of Antiviral
Compounds Aiming at the Chikungunya Virus RdRp Protein” Learning outcomes: Research Proposal Writing,
Research Project Design, Literature Review, Pilot Study, Survey Data Collection, Manuscript Writing, ADMET analysis,
Docking, Molecular Modeling, Molecular Dynamics Simulation, Humo Lumo, DFT analysis.
PUBLICATIONS
[2023]
Ahmed, Md Hridoy, et al. "An immuno-informatics approach for annotation of hypothetical proteins and
multi-epitope vaccine designed against the Mpox virus." Journal of Biomolecular Structure and Dynamics
(2023): 1-20. https://doi.org/10.1080/07391102.2023.2239921
[2023]
Ahmed, Md Hridoy, et al. "A Structure-Based Drug Design Approach for the Identification of Antiviral
Compounds Targeting the Chikungunya Virus RdRp Protein." Chemical Physics Impact (2023): 100450. https://
doi.org/10.1016/j.chphi.2023.100450
PUBLICATION: UNDER REVIEW
[ Current ]
Under Review Manuscripts
• In silico investigations identifed Butyl Xanalterate to competently target CK2α (CSNK2A1) for therapy of prostate cancer
• Computational approach to investigate bioactive molecules from Saussurea Costus plant as MPXV inhibitors using
reverse docking, molecular dynamics simulation, and pharmacokinetic ADMET parameters.
• Genome-wide Study For Annotating Functional Pathway of 121 Established Breast Cancer Risk Variants.
• An Immuno-informatics study targets 20 membrane glycoproteins for B cell and T cell epitope prediction and multiepitope vaccine design against the Monkeypox virus.
• A computational approach for annotation of hypothetical proteins and reverse vaccinology techniques to design multiepitope vaccine against Chlamydia trachomatis
• An Immuno-informatics approach for annotation of hypothetical proteins, T cell and B cell epitope prediction and
reverse vaccinology techniques to design multi-epitope vaccine against Streptococcus pyogenes
CONFERENCES AND SEMINARS
India
Oral Presentation at Darwin International Conference-4th Edition Champion
Title: “An immuno-informatics approach for annotation of hypothetical proteins and multi-epitope vaccine designed
against the Mpox virus.”
Bangladesh
Oral Presentation at International Conference of Natural Science and Technology, Asian University for
Women, Title: “A Structure-Based Drug Design Approach for the Identification of Antiviral Compounds Targeting the
Chikungunya Virus RdRp Protein”
Bangladesh
Poster Presentation on DNA Day at Dept. of Genetic Engineering and Biotechnology, University of Chittagong
Champion
title: "Immuno-informatics Approach for Hypothetical Protein Annotation and Multi-epitope Vaccine Design Against
Streptococcus pyogenes: T and B Cell Epitope Prediction and Reverse Vaccinology"
Bangladesh
Oral Presentation at ICSB-RSG Bioinformatics Symposium Title: "Immuno-informatics Study Targeting 20
Membrane Glycoproteins for B and T Cell Epitope Prediction and Multi-epitope Vaccine Design Against Monkeypox Virus"
Chittagong, Bangladesh
A business idea contest at the Hult Prize, University of Chittagong titled: "Biomass Energy: Turning Organic Matter
into Power"
Chittagong, Bangladesh
Poster presentation contest at Chittagong University Scientific Society, University of Chittagong title: "In Silico
Investigation Identifies Butyl Xanalterate as a Potential CK2α (CSNK2A1) Inhibitor for Prostate Cancer Therapy"
Chittagong, Bangladesh
Poster presentation contest at International Islamic University Chittagong title: "Managing Diabetes: Key Steps
for a Healthy Life"
Chittagong, Bangladesh
Business Idea contest at Startup Chattogram, Bangladesh, Title: "Discreet and Private: Sanitary Napkins Delivered
to Your Home"
Chittagong, Bangladesh
Poster Presentation at Jamal Nazrul Islam International Conference, CURHS, University of Chittagong Title: "C
omputational Investigation of Saussurea costus Bioactive Molecules as Potential MPXV Inhibitors: Reverse Docking,
Molecular Dynamics, and ADMET Analysis"
HONOURS AND AWARDS
[ 2023 ] Darwin International Conference-4th Ed
Awarded as the Best Research Paper Presenter Title: "An immuno-informatics approach for annotation of
hypothetical proteins and multi-epitope vaccine designed against the Mpox virus."
[ 2016 ] Ministry of Science, Bangladesh
Awarded as the Most Brilliant Student of the district Kishoreganj, Bangladesh. (Science Category - 2016)
[ 2023 ] International Conference of Natural Science and Technology, Asian University for Women, Chittagong.
Awarded as the Best Campus Representative
[ 2024 ] Dept. of Genetic Engineering and Biotechnology, University of Chittagong (Senior Category)
Awarded as the Best Poster Presenter
[ 2017 ] Grameen Bank, Bangladesh.
Grameen Bank Scholarship winner
ADDITIONAL COURSES
Sanger Sequencing Training on FGP Laboratory, University of Chittagong.
Learning outcomes:
• Sample Preparation
• Sample Loading to Sanger Machine
• Filling Cartridge
• Sample Run
• Sequence Analysis and
• General Troubleshooting
[ 2022 ]
Training on Research Methodology, Red & White, BRAC University, Dhaka.
Learning outcomes:
• Research Methodology
• How to write research proposal
• How to design research project Basic
• Bioinformatics tools
[ 2021 ]
Online course on diabetes at COURSERA from the University of Copenhagen.
Learning outcomes:
• Pathophysiology of Diabetes
• Types and Treatment of Diabetes
• Epigenetic Factors
• Diet and Exercise
[ 2024 ]
Training on Advance Bioinformatics and Data Analysis, NextGenHelper, India.
Learning outcomes:
• Biological Networks and Gene Networking
• Biological Network Analysis by Cytoscape
• Microbiome Data Analysis
• Python programming
• Biopython for data analysis
• "R" and "R-Studio" for data analysis
• File and data handling in "R"
• Graph preparation in "R" and "R-Studio" by "ggplot2"
• Basic and Advanced Linux commands
• Next Generation Sequencing (NGS) techniques and NGS data filtering
• Whole genome assembly with NGS datasets
• Whole Genome Annotations
• Gene expression calculation by RNA-Seq data analysis
• GWAS analysis
• Variation analysis with NGS datasets
[ 2024 ]
Training on Linux, The Bioscience Factory Research Center, Bangladesh,
Learning outcomes:
• Hands on Introduction to Linux
• Bash Scripting for Biologists
NETWORKS AND MEMBERSHIPS
Chittagong, Bangladesh
Eco-network. Member
[ 2023 ] Chittagong, Bangladesh
Community of Biotechnology. Committee member
[ 2022 ]
Bio-Icon Academy Member
[ 2022 ] Chittagong, Bangladesh
Scholarship School Bangladesh. Member
MANAGEMENT AND LEADERSHIP SKILLS
Event Coordinator and Anchor Training event: "Learn Bioinformatics with BioPC-22."
Duration: 20-11-22 to 25-12-22
Participants: 200.
Organizer Bangladesh Biology Olympiad, Chittagong Region.
Duration: 10-03-24 to 15-03-24
Participants: 1800.
Head Coordinator 1st Biology and Bioinformatics Olympiad, BioPC, Bangladesh.
Duration: 20-06-23 to 25-07-23
Participants: 3000.
Project Leader: A team of 40 Research Aspirants Five Bioinformatics Research Projects at BioPC.
20-12-22 to present.
Head Coordinator 2nd Biology and Bioinformatics Olympiad, BioPC, Bangladesh.
Duration: 10-12-23 to 15-12-23
Participants: 2000.
COMMUNICATION AND INTERPERSONAL SKILLS
Anchor. Learn Bioinformatics with BioPC-23.
Duration: 01-01-23 to 01-02-23
Participants: 100
Anchor. Computer Aided Drug and Vaccine Design.
Duration: 20-10-23 to 25-12-22
Participants: 100.
Anchor. Data analysis with SPSS.
Duration: 10-05-24 to 25-06-24
Participants: 100.
VOLUNTEERING
[ 2022 ] Chittagong, Bangladesh
Volunteer at Volunteer for Bangladesh(VBD). I took part in several waste cleanup programs of VBD in Chittagong
town.
[ 2024 ] Chittagong, Bangladesh
Campus Representative at the International Conference of Natural Science and Technology, Asian University
for Women, Chittagong. I was selected as the best campus representative in this international conference.
CREATIVE WORKS
[ 2020 – Current ]
Founder and Blogger LifeHackerBlog
• Writing and maintaining a blog for spreading knowledge related to life science.
• Awarirng students regarding health & disease.
• Sharing important information related to higher studies and research.
Link: www.lifehackerblog.home.blog
HOBBIES AND INTERESTS
Sport I like to play cricket in my free time. I am the captain of my department's cricket team.
Besides, I am very fond of chess.
Traveling I love to travel a lot. Every month I left my home for roaming in an unknown place. I visited most of the
districts of Bangladesh. I also love to do adventures like camping on the hilltop and at beach. So, traveling is my
hobby
Literature I love to read books very much. Specially, i have an interest in history and science fiction.
ORGANISATIONAL SKILLS
Founder and Head of Research BioPC - A BIoinformatics Lab of Research and Training
SOCIAL AND POLITICAL ACTIVITIES
[ 2020 – 2024 ] Kishoreganj and Coxsbazar, Bangladesh
Monthly financial contributor to social welfare organizations (Donator) These organizations help the
underprivileged children to improve their health and education.